Hirsch-Hoffmann, Matthias

ETH Zürich Matthias Hirsch-Hoffmann Professur Pflanzenbiotechnologie LFW E 31 Universitätstrasse 2 8092 Zuerich Phone: +41 44 632 97 40 E-Mail:

EDUCATION

1986 Diplôme de Commerce (Option: Gestion et Informatique)
1983 - 1986 École Supérieure de Commerce Neuchâtel

PROFESSIONAL EXPERIENCE

08.2001-present
ETH Zürich, Institut für Pflanzenwissenschaften.
03.1998-08.2001
Selbständig, Hirsch-Hoffmann Informatik
11.1986-02.1998
IBM (Schweiz), Zürich

PUBLICATIONS

• Baerenfaller K, Massonnet C, Walsh S, Baginsky S, Bühlmann P, Hennig L, Hirsch-Hoffmann M, Howell KA, Kahlau S, Radziejwoski A, Russenberger D, Rutishauser D, Small I, Stekhoven D, Sulpice R, Svozil J, Wuyts N, Stitt M, Hilson P, Granier C and Gruissem W (2012)
  Systems-based analysis of Arabidopsis leaf growth reveals adaptation to water deficit
  Molecular Systems Biology    [Link]
   
• Hirsch-Hoffmann M, Gruissem W and Baerenfaller K (2012)
  pep2pro: the high-throughput proteomics data processing, analysis, and visualization tool
  Frontiers in Plant Proteomics    [Link]
   
• Bischof S, Baerenfaller K, Wildhaber T, Troesch R, Vidi P-A, Roschitzki B, Hirsch-Hoffmann M, Hennig L, Kessler F, Gruissem W and Baginsky S (2011)
  Plastid Proteome Assembly without Toc159: Photosynthetic Protein Import and Accumulation of N-Acetylated Plastid Precursor Proteins
  The Plant Cell    [Link]
   
• Vranová E, Hirsch-Hoffmann M., Gruissem W. (2011)
  AtIPD: A Curated Database of Arabidopsis Isoprenoid Pathway Models and Genes for Isoprenoid Network Analysis
  Plant Physiology    [Link]
   
• Baerenfaller K, Hirsch-Hoffmann M, Svozil J, Hull R, Russenberger D, Bischof S, Lu Q, Gruissem W, Baginsky S (2011)
  pep2pro: a new tool for comprehensive proteome data analysis to reveal information about organ-specific proteomes in Arabidopsis thaliana.
  Integrative Biology    [Link]
   
• Joshi HJ, Hirsch-Hoffmann M, Baerenfaller K, Gruissem W, Baginsky S, Schmidt R, Schulze WX, Sun Q, van Wijk KJ, Egelhofer V, Wienkoop S, Weckwerth W, Bruley C, Rolland N, Toyoda T, Nakagami H, Jones AM, Briggs SP, Castleden I, Tanz SK, Millar AH, Heazlewood JL. (2011)
  MASCP Gator: An aggregation portal for the visualization of Arabidopsis proteomics data.
  Plant Physiology    [Link]
   
• Baerenfaller K, Grossmann J, Grobei MA, Hull R, Hirsch-Hoffmann M, Yalovsky S, Zimmermann P, Grossniklaus U, Gruissem W and Baginsky S (2008)
  Genome-Scale Proteomics Reveals Arabidopsis thaliana Gene Models and Proteome Dynamics
  Science, 320(5878), 938-41
   
• Exner, V., Hirsch-Hoffmann, M., Gruissem, W., Hennig, L. (2008)
  PlantDB - a versatile database for managing plant research
  Plant Meth, 4, 1    [Link]
   
• Kleffmann, T., Zychlinski, A., Russenberger, D., Hirsch-Hoffmann, M., Gehrig, P., Gruissem, W. and Baginsky, S. (2007)
  Proteome dynamics during plastid differentiation in rice (Oryza sativa L.)
  Plant Physiology, 143, 912-923    [Link]
   
• Laule O, Hirsch-Hoffmann M, Hruz T, Gruissem W, and P Zimmermann (2006)
  Web-based analysis of the mouse transcriptome using Genevestigator
  BMC Bioinformatics, 7:311    [Link]
   
• Tomas Hruz, Matthias Hirsch-Hoffmann, Wilhelm Gruissem, Philip Zimmermann (2006)
  Reducing Java internet project risks: a case study of public measurement of client component functionality in the user community
  Proceedings of the 4th international symposium on Principles and practice of programming in Java, ACM International Co, 178
   
• Kleffmann, T., Hirsch-Hoffmann, M., Gruissem, W. and Baginsky, S. (2006)
  plprot-a comprehensive proteome database for different plastid types
  Plant Cell Physiol, 47, 3, 432-436    [Link]
   
• Zimmermann P, Hirsch-Hoffmann M, Hennig L, Gruissem W (2004)
  GENEVESTIGATOR: Arabidopsis Microarray Database and Analysis Toolbox
  Plant Physiology, 136, 1, 2621-2632    [Link]